MITOMAP: Reported mtDNA Deletions

Last Edited: Mar 21, 2024

Deletion Junction (nt:nt)	Deletion Size (bp)	Repeat Location (nt)	Repeat Type	More Info

"105:112","-6","-","NR","5""297:348","-50","298-306/349-357","D, 9/9","2""470:5152","-4681","471-483/5152-5163","D, 12/13","1""502:5443","-4939","504-512/5443-5451","D, 8/9","1""547:4443","-3895","536-548/4430-4442","D, 13/13","7""1836:5447","-3610","1837-1840/5447-5451","D, 4/4","1""3173:14161","-10987","3166-3173/14154-14161","D, 8/8","1""3323:3588","-264","3330-3334/3597-3601","D, 5/5","1""4398:14822","-10423","4389-4398/14812-12821","D, 10/10","3""5772:12916","-7143","-","-","1""5786:13923","-8136","-","NR","1""5793:12767","-6973","5786-5792/12757-12763","D, 6/7","1""5835:12661","-6825","5836-5843/12666-12673","D, 6/8","1""6002:11221","-5218","-","-","1""6019:6025","-5","6015-6019/6020-6024","D, 5/5","1""6023:14424","-8400","6023/14423","D, 1/1","1""6074:9179","-3104","6080-6083/9181-9184","D, 4/4","1""6075:13799","-7723","6076-6084/13799-13807","D, 9/9","1""6124:15894","-9769","3108-6017/15901-15912","D, 8/10","1""6226:13456","-7229","6218-6226/13447-13455","D, 9/9","1""6238:14103","-7864","6235-6238/14099-14102","D, 4/4","1""6325:13989","-7663","6326-6341/13889-14004","D, 16/17","2""6329:13994","-7664","6325-6340/13989-14005","D, 17/18","1""6330:13994","-7663","6331-6341/13994-14004","D, 11/11","2""6341:13989","-7647","-","-","1""6380:14096","-7715","6369-6374/14099-14104","D, 6/6","1""6465:14135","-7669","6466-6476/14135-14145","D, 11/11","1""6601:16284","-9682","6592-3501/16274-16283","D, 10/10","1""6742:13223","-6480","-","-","1""7128:13992","-6863","-","-","1""7130:14628","-7497","-","-","2""7193:14596","-7402","7169-7173/14609-14613","I, 5/5","1""7205:12090","-4884","-","-","1""7342:9916","-2573","-","NR","1""7409:13687","-6277","-","NR","1""7438:13476","-6037","7439/13476","D, 1/1","1""7449:15926","-8476","-","NR","1""7491:11004","-3512","7484-7491/10996-11003","D, 8/8","2""7493:12762","-5268","7491-7493/12759-12761","D, 3/3","1""7501:14428","-6926","7502-7506/14428-14432","D, 5/5","1""7543:15018","-7474","-","NR","1""7635:15440","-7804","7627-7630/15432-15435","D, 4/4","1""7669:15437","-7767","7662-7669/15429-15436","D, 8/8","2""7697:12364","-4666","-","NR","2""7775:13532","-5756","7769-7775/13525-13531","D, 7/7","1""7777:13794","-6016","7780-7783/13796-13799","D, 4/4","1""7794:12561","-4766","-","NR","1""7808:14799","-6990","7809-7814/14799-14804","D, 6/6","1""7815:15389","-7565","7816-7823/15381-15388","D, 8/8","2""7817:14536","-6718","-","NR","1""7829:14135","-6305","7824-7829/14129-14134","D, 6/6","1""7841:13905","-6063","7842-7849/13905-13912","D, 6/8","4""7845:9748","-1902","7838-7840/9747-9749","D, 3/3","3""7959:13787","-5827","7954-7959/13781-13786","D, 6/6","1""7964:12432","-4467","-","NR","1""7974:15496","-7521","7975-7982/15496-15503","D, 8/8","3""7989:15435","-7445","-","NR","1""7992:15730","-7737","7986-7992/15723-15729","D, 7/7","1""8030:16075","-8044","8030-8034/16071-16075","D, 5/5","1""8032:16075","-8042","8030-8034/16071-16075","D, 5/5","1""8032:12300","-4267","8032-8033/12299-12300","D, 2/2","1""8034:16076","-8041","8030-8034/16071-16075","D, 5/5","1""8034:11423","-3388","-","NR","1""8058:12215","-4156","-","NR","1""8095:12393","-4297","-","NR","1""8210:15339","-7128","-","NR","2""8213:13991","-5777","8214-8220/13991-13997","D, 7/7","1""8213:16070","-7856","8207-8212/16071-16076","D, 6/6","1""8271:8281","-9","NR","NR","49""8278:13770","-5491","8272-8277/13763-13768","D, 6/6","1""8304:15055","-6750","8305-8312/15049-15056","D, 6/8","1""8312:13667","-5354","8310-8312/13664-13666","D, 3/3","1""8371:12084","-3712","-","NR","1""8412:15664","-7251","8407-8420/15658-15671","D, 12/14","2""8421:13564","-5142","-","NR","1""8426:12894","-4467","8416-8420/12890-12894","D, 5/5","1""8439:16075","-7635","8433-8439/16068-16074","D, 7/7","1""8468:13446","-4977","8470-8482/13447-13459","D, 13/13","3""8469:13447","-4977","8470-8482/13447-13459","D, 13/13","136""8469:14805","-6335","8470-8476/14805-14811","D, 7/7","1""8469:13460","-4936","-","NR","1""8482:13460","-4977","8470-8482/13447-13459","D, 13/13","8""8482:13446","-4963","8470-8482/13447-13459","D, 13/13","1""8517:15421","-6903","8512-8517/15408-15412","D, 5/5","2""8543:15672","-7128","-","-","1""8562:13759","-5196","-","NR","2""8563:14596","-6032","8558-8563/14588-14593","D, 6/6","1""8569:14603","-6033","-","-","1""8570:13236","-4665","8566-8571/13237-13242","D, 5/6","2""8571:15827","-7255","8563-8571/15827/15835","D, 9/9","1""8573:15727","-7153","8574-8587/15727-15737","D, 11/14","1""8577:12983","-4405","-","-","1""8580:15731","-7150","8581-8587/15731-15737","D, 7/7","1""8582:15957","-7374","-","NR","1""8623:15662","-7038","8617-8623/15656-15662","D, 7/7","1""8624:13886","-5261","8617-8624/13877-13885","D, 8/8","1""8630:13581","-4950","-","NR","1""8631:13513","-4881","8625-8631/13506-13512","D, 7/7","1""8637:16084","-7446","-","NR","1""8648:16085","-7436","8637-8648/16073-16084","D, 12/12","7""8707:13723","-5015","-","NR","1""8823:15855","-7031","8814-8823/15845-15854","D, 10/10","1""8828:14896","-6067","8829-8838/14896-14095","D, 10/10","2""8929:13301","-4371","-","-","2""8992:16072","-7079","-","NR","3""9144:13816","-4671","9137-9144/13808-13815","D, 8/8","1""9180:14281","-5100","9172-9175/14289-14292","D, 4/4","1""9191:12909","-3717","9189-9191/12906-12908","D, 3/3","1""9238:15576","-6337","9226-9230/15568-15572","D, 5/5","1""9320:14273","-4952","-","-","1""9357:13865","-4507","9345-9361/13851-13868","D, 16/18","1""9431:15423","-5991","-","-","1""9449:14550","-5000","-","NR","1""9483:13723","-4239","-","-","1""9485:13723","-4237","-","NR","1""9486:9502","-15","9480-9486/9495-9501","D, 7/7","1""9486:13723","-4236","-","-","1""9498:13739","-4240","-","-","1""9515:13055","-3539","9517-9525/13055-13063","D, 7/9","1""9574:12972","-3397","9568-9574/12965-12971","D, 7/7","1""9995:15897","-5901","9998-10006/15895-15903","D, 9/9","2""10050:15076","-5025","10051-10055/15076-15080","M, 5/5","1""10058:14593","-4534","10059-10063/14593-14597","D, 5/5","2""10080:14959","-4878","-","-","1""10154:15945","-5790","10138-10144/15944-15950","D, 5/7","3""10167:15568","-5400","-","NR","1""10169:14435","-4265","10161-10165/14424-14428","D, 5/5","1""10190:13753","-3562","10191-10198/13753-13760","D, 8/8","2""10223:12604","-2380","-","NR","1""10367:12829","-2461","10365-10367/12826-12828","D, 3/3","1""10370:15570","-5199","10366-10370/15568-15572","D, 5/5","1""10587:15913","-5325","10576-10581/15905-15910","D, 6/6","1""10598:13206","-2607","10587-10592/13192-13197","D, 6/6","1""10665:14856","-4190","10666-10676/14856-14866","D, 10/11","3""10676:14868","-4191","10666-10676/14856-14866","D, 11/11","2""10744:14124","-3379","10745-10754/14124-14133","D, 9/10","1""10747:15598","-4850","-","-","1""10759:15890","-5130","NR","NR","1""10941:15362","-4420","10942-10951/15362-15371","D, 10/10","1""10943:15372","-4428","10942-10951/15362-15371","D, 10/10","1""10946:15587","-4640","-","-","1""10952:15837","-4884","10953-10961/15837-15845","D, 9/9","2""10961:15846","-4884","-","NR","1""10969:14119","-3149","-","NR","1""11035:15183","-4147","-","-","1""11232:13980","-2747","11234-11242/13981-13989","D, 9/9","4""11262:15375","-4112","-","-","1""11360:15067","-3706","NR","NR","1""11368:15786","-4417","11364-11368/15783-15787","D, 5/5","1""12102:14412","-2309","12103-12112/14412-14421","D, 10/10","4""12103:14414","-2310","12103-12112/14412-14421","D, 10/10","1""12112:14422","-2309","12103-12112/14412-14421","D, 10/10","1""12112:14412","-2299","-","-","1""12113:14422","-2308","12103-12112/14412-14421","D, 10/10","2""12113:14421","-2307","-","-","1""12203:15355","-3151","-","NR","1""12211:15556","-3344","-","-","1""12439:15390","-2950","NR","D, 6/6","1""12492:15917","-3424","-","-","1""13033:14426","-1392","13025-13033/14417-14425","D, 9/9","1""13039:15661","-2621","-","-","1""14786:14791","-4","14783-14786","D, 4/4","1""16153:16308","-154","16165-16165/16308-16319","D, 12/12","1"

Note:

Most deletions above are likely somatic mutations. Other somatic variants can be found here. Only deletions with sequenced breakpoints are included. Numerous other reports of mapped deletions have been published without specific sequence data reference.

Reported deletion junctions may be approximate due to the presence identical repeat sequences at the break points. Alternate junctions may be reported in the cited literature due to the inherent ambiguities of the direct repeats.

• D = direct repeat.
• I = indirect repeat, homology as specified.
• NR = no repeats reported.
• N = number of subjects in which the deletion was detected.

References for the "common" deletion.