https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER The web for users, groups and offices. Foswiki is the Free and Open Source Wiki. en-us Copyright 2026 by contributing authors Wiki Administrator [mitomap@email.chop.edu] The contributing authors of Foswiki Foswiki https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER https://mitomaster.mitomap.org/foswiki/bin/../pub/System/ProjectLogos/foswiki-logo.png https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/MitomasterInstructions1 Mitomaster Instructions Mitomaster has been rebuilt on a new framework. Analysis is done on input mitochondrial DNA sequences. The current version (Beta 1) perfor... (last changed by UnknownUser) 2025-02-24T01:40:03Z unknown https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/WebHome (last changed by UnknownUser) 2024-08-21T15:08:18Z unknown https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HaplogrepNote Mitomaster uses HaploGrep3 with Phylotree 17.2 (rCRS) for haplogroup determination. (last changed by UnknownUser) 2024-08-21T15:02:39Z unknown https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/FastaFormat FASTA format for nucleic acid sequences in Mitomaster A sequence in FASTA format begins with a single line description, followed by lines of sequence data. The de... (last changed by UnknownUser) 2023-06-21T00:19:09Z unknown https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/MitomasterInstructions Mitomaster Instructions Mitomaster has been rebuilt on a new framework. Analysis is done on input mitochondrial DNA sequences. The current version (Beta 1) perfor... (last changed by JeremyLeipzig) 2022-10-16T18:02:32Z JeremyLeipzig https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AlleleExamples mtDNA Allele Examples * This page gives guidelines for describing mtDNA variants * Examples have the reference sequence on top and the variant sequence on t... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AlleleSelectorComponent function setAlleleFields() { radioElements = document.getElementsByName("AlleleType"); polyPosField = document.getElementById("PolymorphismPosition"); ... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisAlleleHelp Allele Analysis Help (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisOldPrimerSelection Mitochondrial SNP Primer Selection Tool Primer Length: Min: 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 Max: 16 17 18 19 20 21 22 ... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisPrimerSelection Mitochondrial SNP Primer Selection Tool Note: this tool is currently down. It is in the process of being re written due to our recent move. Please check back nex... (last changed by MarieLott) 2016-02-12T17:07:52Z MarieLott https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisSeqBuilder * Create a new javascript file attached to this topic using my template javascript file as a base. * Rebuild the form using Foswiki CSS classes for the widgets... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/ApplicationTemplate Application Template This page provides a functional skeleton for a new CMEM Web application. It assumes that your application will involve input from an HTML f... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HelpAnalysisSeq Seq Analysis Help A reference for analyzing your mtDNA data, interpreting the results you receive, and citing the software in your paper. Contents Citing Dat... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HumanAllele THIS PAGE IS STILL BEING UPDATED TO THE NEW MITOMASTER SOFTWARE SHOULD WORK PROPERLY SOON Nucleotide Difference: to Due to historical precedent mtDNA varia... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HumanLocus This page should give the coding affects for all the variants found within a single locus of a submitted genome. Coding Effects In Locus MM:LocusName:MM For Geno... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HumanSeq Genome Analysis MM:SeqID:MM * Analyses are periodically deleted from the system. * Click on 'Printable' at the bottom of the page to get a more printer frie... (last changed by MartyBrandon) 2016-02-12T17:07:52Z MartyBrandon