https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER Copyright 2026 by contributing authors <updated>2025-02-24T01:40:03Z</updated> https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/MitomasterInstructions1 2025-02-24T01:40:03Z

Mitomaster Instructions Mitomaster has been rebuilt on a new framework. Analysis is done on input mitochondrial DNA sequences. The current version (Beta 1) perfor... (last changed by UnknownUser)

UnknownUser https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HaplogrepNote 2024-08-21T15:02:39Z

Mitomaster uses HaploGrep3 with Phylotree 17.2 (rCRS) for haplogroup determination. (last changed by UnknownUser)

UnknownUser https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/FastaFormat 2023-06-21T00:19:09Z

FASTA format for nucleic acid sequences in Mitomaster A sequence in FASTA format begins with a single line description, followed by lines of sequence data. The de... (last changed by UnknownUser)

UnknownUser https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/MitomasterInstructions 2022-10-16T18:02:32Z

Mitomaster Instructions Mitomaster has been rebuilt on a new framework. Analysis is done on input mitochondrial DNA sequences. The current version (Beta 1) perfor... (last changed by JeremyLeipzig)

JeremyLeipzig https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AlleleExamples 2016-02-12T17:07:52Z

mtDNA Allele Examples * This page gives guidelines for describing mtDNA variants * Examples have the reference sequence on top and the variant sequence on t... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AlleleSelectorComponent 2016-02-12T17:07:52Z

function setAlleleFields() { radioElements = document.getElementsByName("AlleleType"); polyPosField = document.getElementById("PolymorphismPosition"); ... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisAlleleHelp 2016-02-12T17:07:52Z

Allele Analysis Help (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisOldPrimerSelection 2016-02-12T17:07:52Z

Mitochondrial SNP Primer Selection Tool Primer Length: Min: 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 Max: 16 17 18 19 20 21 22 ... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisPrimerSelection 2016-02-12T17:07:52Z

Mitochondrial SNP Primer Selection Tool Note: this tool is currently down. It is in the process of being re written due to our recent move. Please check back nex... (last changed by MarieLott)

MarieLott https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/AnalysisSeqBuilder 2016-02-12T17:07:52Z

* Create a new javascript file attached to this topic using my template javascript file as a base. * Rebuild the form using Foswiki CSS classes for the widgets... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/ApplicationTemplate 2016-02-12T17:07:52Z

Application Template This page provides a functional skeleton for a new CMEM Web application. It assumes that your application will involve input from an HTML f... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HelpAnalysisSeq 2016-02-12T17:07:52Z

Seq Analysis Help A reference for analyzing your mtDNA data, interpreting the results you receive, and citing the software in your paper. Contents Citing Dat... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HumanAllele 2016-02-12T17:07:52Z

THIS PAGE IS STILL BEING UPDATED TO THE NEW MITOMASTER SOFTWARE SHOULD WORK PROPERLY SOON Nucleotide Difference: to Due to historical precedent mtDNA varia... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HumanLocus 2016-02-12T17:07:52Z

This page should give the coding affects for all the variants found within a single locus of a submitted genome. Coding Effects In Locus MM:LocusName:MM For Geno... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/HumanSeq 2016-02-12T17:07:52Z

Genome Analysis MM:SeqID:MM * Analyses are periodically deleted from the system. * Click on 'Printable' at the bottom of the page to get a more printer frie... (last changed by MartyBrandon)

MartyBrandon https://mitomaster.mitomap.org/foswiki/bin/view/MITOMASTER/SpeciesContrib 2016-02-12T17:07:52Z

Bio::Mitomaster Species Data Contribution Description The Bio::Mitomaster framework can be extended to work with other species by adding meta data for that speci... (last changed by MartyBrandon)

MartyBrandon